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Download the Scenario File for documents reshredding. (Scenario file no longer needed for recent versions of the Migration tool, as it is incorporated into the tool).
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Open the Migration Tool UI.
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Make sure DBXL Server Root is set to your DBXL (normally http://myserver/QdabraWebService).
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Select the "custom" tab and load the scenario you've downloaded in step 2.
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Scroll down in the scenario variables list and set "docType" to the document type you want to clear.
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Scroll down the Scenario Variables list and change sourceDBXL/targetDBXL.
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Select "ReshredDocuments" in the scenario runs and click "Run". This should reshred all the documents from the specified document type: